Creates median and mean abundance barplots, and boxplots for microshades taxa contribution plots keeping colors consistent in the microshades stacked barplots

Source: R/plot_functions.R

Creates median and mean abundance barplots, and boxplots for microshades taxa contribution plots keeping colors consistent in the microshades stacked barplots

plot_contributions(mdf, cdf, col_name, data_match, short_name = NULL)

Arguments

mdf

melted data frame with microshades group processing

cdf

color data frame

col_name

name of column to subset from

data_match

specific data to subset match

short_name

alternate group name in both the mdf and cdf, note the group column still must exist

Value

list

  • "box" boxplot

  • "mean" barplot of mean abundance

  • "median"barplot of median abundance

Examples


plots <- plot_contributions(mdf, cdf,  "dmm", 1, short_name = "group_short")
#> Error in filter(., !!sym(col_name) == data_match): object 'mdf' not found

plots$box
#> Error in eval(expr, envir, enclos): object 'plots' not found
plots$mean
#> Error in eval(expr, envir, enclos): object 'plots' not found
plots$median
#> Error in eval(expr, envir, enclos): object 'plots' not found

plots <- plot_contributions(mdf, cdf,  "sex", "female")
#> Error in filter(., !!sym(col_name) == data_match): object 'mdf' not found