Function reference • microshades

microshades palettes Access the microshades color palettes
`microshades_palettes`	List of palettes
`microshades_cvd_palettes`	List of CVD palettes
`microshades_palette()`	Microshades sequential color shading palette accessor
`default_hex()`	Return default hex colors
Apply microshades to phyloseq objects Functions for using microshades advanced color organization on phyloseq objects.
`prep_mdf()`	Prepare melted phyloseq object to map colors to
`create_color_dfs()`	Generates abundance sorted data frame and a color palette data frame
`reorder_samples_by()`	Reorder the samples or stacked group levels by abundance
`match_cdf()`	Apply the color factoring from one cdf to a different melted data frame
`color_reassign()`	Reassign the microshades colors to different groups
`extend_group()`	Extends the number of subgroups shown for one particular group by adding additional colors.
Plot microshades objects Functions plotting microshades organized objects.
`plot_microshades()`	Plot the mdf created with the microshades package
`plot_contributions()`	Creates median and mean abundance barplots, and boxplots for microshades taxa contribution plots keeping colors consistent in the microshades stacked barplots
`custom_legend()`	Create a custom legend

Reference